Detail View - Data AccessID 30
General Information
Manuscript title | Dynamic modeling of the central carbon metabolism of Escherichia coli. |
PubMed ID | 17590932 |
Journal | Biotechnology and Bioengineering |
Year | 2002 |
Authors | Christophe Chassagnole, Naruemol Noisommit-Rizzi, Joachim W. Schmid, Klaus Mauch, Matthias Reuss |
Affiliations | Institute of Biochemical Engineering, University of Stuttgart |
Keywords | dynamic model, Escherichia coli, intracellular metabolites, transient conditions, control and stability analysis |
Full text article | Chassagnole_2002.pdf |
Project name | not specified |
Experiment Description
Organism | Escherichia coli |
Strain | K-12 W3110 |
Data type | time-series data of metabolites |
Data units | mM |
Execution date | not specified |
Experimental Details
Temperature (°C) | 35.0 |
pH | 7.0 |
Carbon source | glucose |
Culture mode | chemostat |
Process condition | aerobic |
Dilution rate (h⁻¹) | 0.1 |
Working volume (L) | 1.5 |
Biomass concentration (g/L) | 8.7 |
Medium composition | Synthetic mineral medium: 4.0 g/L Na2SO4, 5.36 g/L (NH4)2SO4, 1.0 g/L NHCl, 7.3 g/L K2HPO4, 1.8 g/L NaH2PO4 H2O, 120 g/L (NH4)2-H-citrate, 4.0 mL/L MgSO4 (1M), 6.0 ml/L trace element solution, 0.02 g/L thiamine, 20.0 g/L glucose. |
General protocol information |
Sampling method:
manually every 3 seconds with vacuum-sealed, precooled glass tubes containing the quenching solution Quenching procedure: liquid nitrogen (-196 ºC) and perchloric acid Extraction technique: perchloric acid Sample analyzing method: enzymatic, HPLC/HIC |
Methods description - Notes | The concentrations of the extracellular metabolites (glucose, acetate) and most of the intracellular metabolites were determined as describe previously [1]. Improved analysis of the adenine nucleotides was summarized by Mailinger et al. [2] and Meyer et al. [3]. The metaboli ... -------------References------------
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Data file |
KIMODATAID30_v1.xlsx
|
Alternative format(s) |
KIMODATAID30_metab_timeseries.csv
Preview
KIMODATAID30_cometab_timeseries.csv Preview |
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metadataDataEntryID30.rdf
XML: metadataDataEntryID30.xml Plain text: metadataDataEntryID30.txt |
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Entered by:
Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2013-03-06 18:00:37 UTC
Updated: 2020-04-24 16:10:28 UTC
Version: 1
Status: (reviewed) 2013-12-06 17:17:38 UTC
Views: 1300
Downloads: 101
Associated Models
Here we can find relevant models associated with Data EntryID 30:
Model EntryID |
Model name | Category | Model Type | Data used for | Access |
---|---|---|---|---|---|
13 | Chassagnole2002_Carbon_Metabolism | Metabolism | ordinary differential equations | Model building and Model validation |
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- Several models can be associated.