Detail View - Data AccessID 51
General Information
Manuscript title | Dynamic simulation of an in vitro multi-enzyme system. |
PubMed ID | 17239859 |
Journal | FEBS Letters |
Year | 2007 |
Authors | Nobuyoshi Ishii, Yoshihiro Suga, Akiko Hagiya, Hisami Watanabe, Hirotada Mori, Masataka Yoshino, Masaru Tomita |
Affiliations | Institute for Advanced Biosciences, Keio University, Japan |
Keywords | dynamic simulation, enzyme kinetics, metabolism, glycolysis, in vitro |
Full text article | Ishii_2007.pdf |
Project name | not specified |
Experiment Description
Organism | Escherichia coli |
Strain | K-12 AG1 |
Data type | time-series data of metabolites |
Data units | mM |
Execution date | not specified |
Experimental Details
Temperature (°C) | 37.0 |
pH | not specified |
Carbon source | glucose |
Culture mode | batch |
Process condition | aerobic |
Dilution rate (h⁻¹) | — |
Working volume (L) | 0.2 |
Biomass concentration (g/L) | not specified |
Medium composition | LB medium supplemented with 50 µg/ml chloramphenicol to OD600=0.5 |
General protocol information |
Sampling method:
Samples were obtained 2 h after addition of 0.1 mM isopropyl-b-D-thiogalactopyranoside (IPTG) Quenching procedure: cells were collected by centrifugation (6000 r.p.m., 5 min at 4 ºC) and resuspended in 10 ml of cold buffer I [50 mM sodium phosphate (pH 7.0), 200 mM NaCl, Protease inhibitor (Complete Mini EDTA-Free, Roche Diagnostics, Basel, Switzerland)]. Extraction technique: sonication Sample analyzing method: enzymatic |
Methods description - Notes | Measurement of metabolite concentrations - A sample was added to 100 mM MOPS buffer (pH 7.2) containing 0.1 mM NADH, 20 mM MgCl2, 5 mM ATP, and 2 mM DTT (I), and maintained at 37 ºC. Then, 1.8 U/ml ALD, 31 U/ml G3PDH, and 90 U/ml TIM (II), 3 U/ml PfkA (III), 18 U/ml Pgi (IV) ... Read more |
Data file |
KIMODATAID51_v0.xlsx
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Alternative format(s) |
KIMODATAID51_metab_timeseries.csv
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Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2013-05-13 14:45:37 UTC
Updated: 2020-04-24 16:10:31 UTC
Version: 0
Status: (reviewed) 2013-12-06 17:17:38 UTC
Views: 320
Downloads: 69
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