Detail View - Data AccessID 106
General Information
Manuscript title | Analysis of Escherichia coli Anaplerotic Metabolism and Its Regulation Mechanisms From the Metabolic Responses to Altered Dilution Rates and Phosphoenolpyruvate Carboxykinase Knockout. |
PubMed ID | 12966569 |
Journal | Biotechnology and Bioengineering |
Year | 2003 |
Authors | Yang C, Hua Q, Baba T, Mori H, Shimizu K |
Affiliations | Metabolome Unit, Institute for Advanced Biosciences, Keio University, Tsuruoka 997-0017, Japan. |
Keywords | Escherichia coli; metabolic flux; 13C labeling; anaplerotic reaction; phosphoenolpyruvate carboxykinase; in vivo regulation |
Full text article | Yang2003.pdf |
Project name | not specified |
Experiment Description
Organism | Escherichia coli |
Strain | W3110 and pck mutant |
Data type | flux measurements |
Data units | (mmol/g-dry cell weight/h) |
Execution date | not specified |
Experimental Details
Temperature (°C) | 37 |
pH | 7.0 |
Carbon source | glucose |
Culture mode | chemostat |
Process condition | aerobic |
Dilution rate (h⁻¹) | 0.1, 0.32, 0.55 (WT ) and 0.1 (pck) |
Working volume (L) | 1.0 |
Biomass concentration (g/L) | see worksheet. |
Medium composition | Medium containing (per liter): 5.0 g of glucose, 1.0 g of NH4Cl, 2.7 g of (NH4)2SO4,6.8gofNa2HPO4,3.0gofKH2PO4, 0.6 g of NaCl, 0.2 g ofMgSO4 7H2O, 1.0 µg of thiamine HCl, 2.0 µL of polypropylene glycol 2000 as an antiform agent, and 10 mL of trace element solution [1]. |
General protocol information |
Flux analysis method:
13C constrained MFA Platform: NMR |
Methods description - Notes | MFA analysis: The carbon flux distribution in the bioreaction network was determined as a best fit to all extracellular flux measurements, the macromolecular biomass composition, and the relative intensities of the 13C-13C scalar coupling multiplets of the aforementioned 47 ... Read more |
Data file |
KIMODATAID106_v1.xlsx
|
Alternative format(s) |
no file uploaded |
Export metadata |
RDF:
metadataDataEntryID106.rdf
XML: metadataDataEntryID106.xml Plain text: metadataDataEntryID106.txt |
Related Data: AccessID 30 | AccessID 35 | AccessID 38 | AccessID 41 | AccessID 44 | AccessID 51 | AccessID 52 | AccessID 54 | AccessID 63 | AccessID 64 | AccessID 65 | AccessID 67 | AccessID 68 | AccessID 74 | AccessID 75 | AccessID 78 | AccessID 79 | AccessID 80 | AccessID 86 | AccessID 87 | AccessID 92 | AccessID 96 | AccessID 101 | AccessID 102 | AccessID 103 | AccessID 104 | AccessID 105 | AccessID 107 | AccessID 108 | AccessID 109 | AccessID 110 | AccessID 112 | AccessID 116 | AccessID 118 | AccessID 119 | AccessID 125 | AccessID 126
Entered by:
Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2018-07-21 16:52:41 UTC
Updated: 2020-04-24 16:10:36 UTC
Version: 1
Status: (reviewed) 2018-07-21 16:56:08 UTC
Views: 341
Downloads: 258
Associated Models
Here we can find relevant models associated with Data EntryID 106:
Model EntryID |
Model name | Category | Model Type | Data used for | Access |
---|---|---|---|---|---|
16 | glycolysis Escherichia coli model | Metabolism | ordinary differential equations | Model validation |
Associate models to data
- Several models can be associated.