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General Information
Manuscript title Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification.
PubMed ID 21092096
Journal Microbial Cell Factories
Year 2010
Authors Tuty AA Kadir, Ahmad A Mannan, Andrzej M Kierzek, Johnjoe McFadden and Kazuyuki Shimizu
Affiliations Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, Iizuka, Fukuoka 820-8502, Japan
Keywords Escherichia coli, single-gene knockouts, main central metabolism and TCA
Full text article
Kadir_2010.pdf
Project name not specified
Data used for Model validation

Model Information

Model name glycolysis Escherichia coli model
Organism Escherichia coli
Associated Data EntryID Escherichia coli (Data EntryID:38)
Escherichia coli (Data EntryID:105)
Escherichia coli (Data EntryID:106)
Escherichia coli (Data EntryID:107)
Model type ordinary differential equations
Category Metabolism
Number of reactions 30
Number of species 23 + 9 co-metabolites
Number of regulators 15
Number of parameters 173
Number of compartments 1
Dilution rate (h-1)
Model file(s) and history
LATEST KIMOMODELID16.zip (2018-07-21 20:34:09 UTC by Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
)
version comment: for batch and continuous simulations
Notes
not specified
Software http://www.matlab.com (MATLAB)
BioModels or JWS Online ID
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Related Model(s): AccessID 13 | AccessID 25 | AccessID 36 | AccessID 38 | AccessID 40 | AccessID 42 | AccessID 43 | AccessID 44 | AccessID 45


Submission and curation

Entered by: Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data

Associated by: kimosys (at) kdbio.inesc-id.pt

Created: 2013-04-24 15:07:11 UTC

Updated: 2018-07-21 20:34:09 UTC

Version: 1

Status: (reviewed) 2013-12-06 18:05:50 UTC

Views: 14

Downloads: 1



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