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General Information
Manuscript title | Integrating Kinetic Model of E. coli with Genome Scale Metabolic Fluxes Overcomes Its Open System Problem and Reveals Bistability in Central Metabolism. |
PubMed ID | 26469081 |
Journal | Plos One |
Year | 2015 |
Authors | Ahmad A. Mannan, Yoshihiro Toya, Kazuyuki Shimizu, Johnjoe McFadden, Andrzej M. Kierzek , Andrea Rocco |
Affiliations | Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, GU2 7XH, United Kingdom |
Keywords | E. coli, Bistability, Central Metabolism |
Full text article |
Mannan_2015.PDF |
Project name | not specified |
Data used for | Model building |
Model Information
Model name | kinetic model of the central carbon metabolism of E. coli |
Organism | Escherichia coli |
Associated Data EntryID |
Escherichia coli (Data EntryID:35) Escherichia coli (Data EntryID:41) Escherichia coli (Data EntryID:44) |
Model type | ordinary differential equations |
Category | Metabolism |
Number of reactions | 37 |
Number of species | 30 |
Number of regulators | 37 |
Number of parameters | 214 |
Number of compartments | not specified |
Dilution rate (h-1) | 0.2 |
Model file(s) and history |
LATEST KIMOMODELID42.ZIP
(2018-07-22 12:01:48 UTC
by Administrator KiMoSysFirst name: Administrator Affiliation: INESC-ID/IST Homepage: http://kdbio.inesc-id.pt/kimosys Interests: mathematical modeling, accessible data, use of data ) |
Notes |
For the analysis and evaluation of the kinetic model, the solver ode15s was used.
|
Software | MATLAB® R2007b (version 7.5.0) |
BioModels or JWS Online ID | — |
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Related Model(s): AccessID 13 | AccessID 16 | AccessID 25 | AccessID 36 | AccessID 38 | AccessID 40 | AccessID 43 | AccessID 44 | AccessID 45
Entered by:
Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2018-07-22 12:01:48 UTC
Updated: 2018-07-22 12:01:48 UTC
Version: 0
Status: (reviewed) 2018-07-22 12:59:11 UTC
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