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General Information
Manuscript title Development of an accurate kinetic model for the central carbon metabolism of Escherichia coli
PubMed ID 27329289
Journal Microbial Cell Factories
Year 2016
Authors Nusrat Jahan, Kazuhiro Maeda, Yu Matsuoka, Yurie Sugimoto and Hiroyuki Kurata
Affiliations Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680‑4 Kawazu, Iizuka, Fukuoka 820‑8502, Japan
Keywords Systems biology, Rational design, Dynamic model, Enzyme kinetics, Transcription factor, Signal transduction, Allosteric enzyme
Full text article
Jahan_2016.pdf
Project name not specified
Data used for Model building and Model validation

Model Information

Model name E. coli Central Carbon Metabolism
Organism Escherichia coli
Associated Data EntryID Escherichia coli (Data EntryID:35)
Escherichia coli (Data EntryID:38)
Escherichia coli (Data EntryID:96)
Model type ordinary differential equations
Category Metabolism
Number of reactions 129
Number of species 52
Number of regulators not specified
Number of parameters 341
Number of compartments 1
Dilution rate (h-1) 0.2, 0.4, 0.5 and 0.7
Model file(s) and history
LATEST KIMOMODELID38.xml (2018-07-20 16:47:46 UTC by Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
)
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Notes
MATLAB version of the model is available at http://www.cadlive.jp/cadlive_main/Softwares/KineticModel/Ecolimetabolism.html.
Software MATLAB2007 or higher
BioModels or JWS Online ID
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XML: metadataModelEntryID38.xml
Plain text: metadataModelEntryID38.txt
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Related Model(s): AccessID 13 | AccessID 16 | AccessID 25 | AccessID 36 | AccessID 40 | AccessID 42 | AccessID 43 | AccessID 44 | AccessID 45


Submission and curation

Entered by: Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data

Created: 2018-07-12 12:32:20 UTC

Updated: 2018-07-23 21:38:00 UTC

Version: 1

Status: (reviewed) 2018-07-12 12:39:06 UTC

Views: 11

Downloads: 1



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