Detail View - Model AccessID 16
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General Information
| Manuscript title | Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification. |
| PubMed ID | 21092096 |
| Journal | Microbial Cell Factories |
| Year | 2010 |
| Authors | Tuty AA Kadir, Ahmad A Mannan, Andrzej M Kierzek, Johnjoe McFadden and Kazuyuki Shimizu |
| Affiliations | Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, Iizuka, Fukuoka 820-8502, Japan |
| Keywords | Escherichia coli, single-gene knockouts, main central metabolism and TCA |
| Full text article |
Kadir_2010.pdf
|
| Project name | not specified |
| Data used for | Model validation |
Model Information
| Model name | glycolysis Escherichia coli model |
| Organism | Escherichia coli |
| Associated Data EntryID |
Escherichia coli (Data EntryID:38) Escherichia coli (Data EntryID:105) Escherichia coli (Data EntryID:106) Escherichia coli (Data EntryID:107) |
| Model type | ordinary differential equations |
| Category | Metabolism |
| Number of reactions | 30 |
| Number of species | 23 + 9 co-metabolites |
| Number of regulators | 15 |
| Number of parameters | 173 |
| Number of compartments | 1 |
| Dilution rate (h-1) | — |
| Model file(s) and history |
LATEST KIMOMODELID16.zip
(2018-07-21 20:34:09 UTC
by Administrator KiMoSysFirst name: AdministratorAffiliation: INESC-ID/IST Homepage: http://kdbio.inesc-id.pt/kimosys Interests: mathematical modeling, accessible data, use of data )
for batch and continuous simulations
|
| Notes |
not specified
|
| Software | http://www.matlab.com (MATLAB) |
| BioModels or JWS Online ID | — |
| Export metadata |
RDF:
metadataModelEntryID16.rdf
XML: metadataModelEntryID16.xml Plain text: metadataModelEntryID16.txt |
Related Model(s): AccessID 13 | AccessID 25 | AccessID 36 | AccessID 38 | AccessID 40 | AccessID 42 | AccessID 43 | AccessID 44 | AccessID 45
Submission and curation
Entered by:
Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2013-04-24 15:07:11 UTC
Updated: 2018-07-21 20:34:09 UTC
Version: 1
Status: (reviewed) 2013-12-06 18:05:50 UTC
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