Repository » Data AccessID 112
Detail View - Data AccessID 112

Back

General Information
Manuscript title Analysis of Escherichia coli Anaplerotic Metabolism and Its Regulation Mechanisms From the Metabolic Responses to Altered Dilution Rates and Phosphoenolpyruvate Carboxykinase Knockout.
PubMed ID 12966569
Journal Biotechnology and Bioengineering
Year 2003
Authors Yang C, Hua Q, Baba T, Mori H, Shimizu K
Affiliations Metabolome Unit, Institute for Advanced Biosciences, Keio University, Tsuruoka 997-0017, Japan.
Keywords Escherichia coli; metabolic flux; 13C labeling; anaplerotic reaction; phosphoenolpyruvate carboxykinase; in vivo regulation
Full text article Yang2003.pdf
Project name not specified


Experiment Description
Organism Escherichia coli
Strain W3110 and pck mutant
Data type metabolites at steady-state
Data units mM
Execution date not specified


Experimental Details
Temperature (°C) 37
pH 7.0
Carbon source glucose
Culture mode chemostat
Process condition aerobic
Dilution rate (h⁻¹) 0.1, 0.32, 0.55 (WT ) and 0.1 (pck)
Working volume (L) 1.0
Biomass concentration (g/L) Yield glu,X (g/g) = 0.40 ± 0.02 (D = 0.1h-1), 0.44 ± 0.02 (D = 0.32h-1) and 0.48 ± 0.03 (D = 0.55h-1) for WT; 0.46 ± 0.02 (D = 0.1h-1) for pck
Medium composition

Medium containing (per liter): 5.0 g of glucose, 1.0 g of NH4Cl, 2.7 g of (NH4)2SO4,6.8gofNa2HPO4,3.0gofKH2PO4, 0.6 g of NaCl, 0.2 g ofMgSO4 7H2O, 1.0 µg of thiamine HCl, 2.0 µL of polypropylene glycol 2000 as an antiform agent, and 10 mL of trace element solution [6].

General protocol information Sampling method: not described

Quenching procedure: To rapidly quench the cell metabolism, 5 mL of culture suspension was cooled to 0°C in a −50°C methanol bath within 15–20 s. Cells were separated from the culture medium by centrifugation, and resuspended in cold 100% methanol immediately.

Extraction technique: chloroform

Sample analyzing method: enzymatic

Methods description - Notes

To rapidly quench the cell metabolism, 5 mL of culture suspension was cooled to 0°C in a −50°C methanol bath within 15–20 s. Cells were separated from the culture medium by centrifugation, and resuspended in cold 100% methanol immediately. Intracellular metabolites were extr ...

Read more
Data file
KIMODATAID112_v0.xlsx Preview file
Alternative format(s)
no file uploaded
Export metadata
RDF: metadataDataEntryID112.rdf
XML: metadataDataEntryID112.xml
Plain text: metadataDataEntryID112.txt
Share | Cite Data EntryID 112


Related Data: AccessID 30 | AccessID 35 | AccessID 38 | AccessID 41 | AccessID 44 | AccessID 51 | AccessID 52 | AccessID 54 | AccessID 63 | AccessID 64 | AccessID 65 | AccessID 67 | AccessID 68 | AccessID 74 | AccessID 75 | AccessID 78 | AccessID 79 | AccessID 80 | AccessID 86 | AccessID 87 | AccessID 92 | AccessID 96 | AccessID 101 | AccessID 102 | AccessID 103 | AccessID 104 | AccessID 105 | AccessID 106 | AccessID 107 | AccessID 108 | AccessID 109 | AccessID 110 | AccessID 116 | AccessID 118 | AccessID 119 | AccessID 125 | AccessID 126


Submission and curation

Entered by: Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data

Created: 2018-07-31 15:50:28 UTC

Updated: 2020-04-24 16:10:36 UTC

Version: 0

Status: (reviewed) 2018-07-31 15:51:08 UTC

Views: 174

Downloads: 52




Associated Models

Here we can find relevant models associated with Data EntryID 112:

Model
EntryID
Model name Category Model Type Data used for Access Json



Associate models to data

- Several models can be associated.

New Model



Back | Top