Quenching procedure:
centrifugation at -19 ºC, 6000g, 3min
Extraction technique:
freezing-thawing in methanol
Sample analyzing method:
enzymatic, LC-MS
Methods description - Notes
Enzymatic assays - analyses of G6P, F6P, DHAP, GAP, FBP, PEP and PYR were performed by enzymatic assays according to Bergmeyer [1] modified for analysis with a microtiter plate photometer.
LC-MS analysis - analyses of AMP, cAMP, ADP, ATP, NAD, NADP, FAD and acetylcoenz
... ymeA (AcCoA) were performed by an LC-MS method adopted from Buchholz et al. [2]. An Aquasil C18 column 250 x 4.6 mm2, 5 µm (Thermo, Dreieich, Germany) was applied for chromatography protected by a guard column of the same material. A degassed binary gradient at 0.3 ml min1 was achieved making use of a P 1100 HPLC pump (Thermo, Dreieich, Germany). Solvent A was 12 mM aqueous ammonium acetate, solvent B was methanol/solvent A (80:20, v/v). Equilibration time was 5 min (2% B). The gradient applied for separation was kept at 2% B for 5 min and increased to 100% B over the next 25 min. This level was held for 10 min. The injection volume was 20 µl, sample temperature was 4ºC and column temperature was set to 35ºC. HPLC flow was transferred directly to the mass spectrometer via the electro-spray ionisation (ESI) interface. ESI-MS analysis was performed using an LCQ Advantage iontrap mass spectrometer (Thermo Finnigan, Dreieich, Germany). N2 was used as sheath gas and helium served as damping gas. Data acquisition and analysis were conducted using the Xcalibur software. The following ESI parameters were employed: temperature of heated capillary: 350ºC; electrospray capillary voltage: 2.5 kV; sheath gas: 60 arbitrary units; auxiliary gas: 20 arbitrary units; detection of negative ions (50–850 u) in full scan mode.
See also figure 5 from the original article.
-------------References----------------
[1] Bergmeyer H (1985). Methods of enzymatic analysis, 3rd edn. Verlag Chemie, Weinheim. http://doi.org/bg6tff [2] Buchholz A, Takors R, Wandrey C (2001). Quantification of intracellular metabolites in Escherichia coli K12 using liquid chromatographic-electrospray ionization tandem mass spectrometric techniques. Anal Biochem 295:129–137. http://doi.org/chsch7
Quenching procedure: Centrifugation at -19 ºC, 6000g, 3min
Extraction technique: freezing-thawing in methanol
Sample analyzing method: LC-MS, enzymatic
Methods description - Notes
Enzymatic assays - analyses of G6P, F6P, DHAP, GAP, FBP, PEP and PYR were performed by enzymatic assays according to Bergmeyer [1] modified for analysis with a microtiter plate photometer.
LC-MS analysis - analyses of AMP, cAMP, ADP, ATP, NAD, NADP, FAD and acetylcoenzymeA (AcCoA) were performed by an LC-MS method adopted from Buchholz et al. [2]. An Aquasil C18 column 250 x 4.6 mm2, 5 µm (Thermo, Dreieich, Germany) was applied for chromatography protected by a guard column of the same material. A degassed binary gradient at 0.3 ml min 1 was achieved making use of a P 1100 HPLC pump (Thermo, Dreieich, Germany). Solvent A was 12 mM aqueous ammonium acetate, solvent B was methanol/solvent A (80:20, v/v). Equilibration time was 5 min (2% B). The gradient applied for separation was kept at 2% B for 5 min and increased to 100% B over the next 25 min. This level was held for 10 min. The injection volume was 20 µl, sample temperature was 4ºC and column temperature was set to 35ºC. HPLC flow was transferred directly to the mass spectrometer via the electro-spray ionisation (ESI) interface. ESI-MS analysis was performed using an LCQ Advantage iontrap mass spectrometer (Thermo Finnigan, Dreieich, Germany). N2 was used as sheath gas and helium served as damping gas. Data acquisition and analysis were conducted using the Xcalibur software. The following ESI parameters were employed: temperature of heated capillary: 350ºC; electrospray capillary voltage: 2.5 kV; sheath gas: 60 arbitrary units; auxiliary gas: 20 arbitrary units; detection of negative ions (50–850 u) in full scan mode.
See also figure 5 from the original article.
-------------References----------------
[1] Bergmeyer H (1985). Methods of enzymatic analysis, 3rd edn. Verlag Chemie, Weinheim.
[2] Buchholz A, Takors R, Wandrey C (2001). Quantification of intracellular metabolites in Escherichia coli K12 using liquid chromatographic-electrospray ionization tandem mass spectrometric techniques. Anal Biochem 295:129–137.
KiMoSys (https://kimosys.org). Data EntryID 52 (Escherichia coli). [online], [Accessed 21 December 2024]. Available from: https://doi.org/10.34619/28xq-2n73