Detail View - Data AccessID 52
General Information
Manuscript title | Metabolic profiling of Escherichia coli cultivations: evaluation of extraction and metabolite analysis procedures. |
PubMed ID | 17479221 |
Journal | Biotechnology Letters |
Year | 2007 |
Authors | Julia Hiller, Ezequiel Franco-Lara, Dirk Weuster-Botz |
Affiliations | Institut fuer Bioverfahrenstechnik, Technische Universitaet Braunschweig, Gausstrasse 17, 38106 Braunschwieg, Germany |
Keywords | extraction methods, metabolic profiling and multi-substrate |
Full text article | no file uploaded |
Project name | not specified |
Experiment Description
Organism | Escherichia coli |
Strain | K-12 DSM 498 |
Data type | metabolites at steady-state |
Data units | mM |
Execution date | not specified |
Experimental Details
Temperature (°C) | 37.0 |
pH | 7.0 |
Carbon source | glucose |
Culture mode | chemostat |
Process condition | aerobic |
Dilution rate (h⁻¹) | 0.125 |
Working volume (L) | 3.0 |
Biomass concentration (g/L) | not specified |
Medium composition | Defined medium: 30 g/l glucose, 0.2 g/l NH4Cl, 2g/l (NH4)2 SO4, 3.25 g/l KH2PO4, 2.5 g/l K2HPO4, 1.5 g/l NaH2PO4.H2O, 1 g/l, MgSO4.7H2O, 10 mg/l, CaCl2.2H2O, 0.5 mg/l, ZnSO47H2O, 0.25 mg/l CuCl2.2H2O, 2.5mg/l MnSO4.H2O, 1.75 mg/l CoCl2.6H2O, 0.125 mg/l H3BO3, 2.5 mg/l AlCl3.6H2O, 0.5mg/l Na2MoO4.2H2O, 18.3 mg/l, FeSO4.7H2O. Magnesium and trace-element solution. |
General protocol information |
Sampling method:
6g cell suspension, 25 g 60% MeOH-H2O 30mM TEA, pH=7.5, T=40ºC Quenching procedure: centrifugation at -19 ºC, 6000g, 3min Extraction technique: freezing-thawing in methanol Sample analyzing method: enzymatic, LC-MS |
Methods description - Notes | Enzymatic assays - analyses of G6P, F6P, DHAP, GAP, FBP, PEP and PYR were performed by enzymatic assays according to Bergmeyer [1] modified for analysis with a microtiter plate photometer.
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Data file |
KIMODATAID52_v0.xlsx
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Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2013-05-23 12:57:59 UTC
Updated: 2020-04-24 16:10:31 UTC
Version: 0
Status: (reviewed) 2013-12-06 17:17:38 UTC
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