Detail View - Data AccessID 61
General Information
| Manuscript title | Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast. |
| PubMed ID | 23549479 |
| Journal | Molecular Systems Biology |
| Year | 2013 |
| Authors | Guillermo G Zampar, Anne Kümmel, Jennifer Ewald, Stefan Jol, Bastian Niebel, Paola Picotti, Ruedi Aebersold, Uwe Sauer, Nicola Zamboni and Matthias Heinemann |
| Affiliations | ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland |
| Keywords | diauxic shift, metabolome, S. cerevisiae, extracelullar |
| Full text article |
Zampar_2013.pdf
|
| Project name | not specified |
Experiment Description
| Organism | Saccharomyces cerevisiae |
| Strain | FY4 |
| Data type | time-series data of metabolites |
| Data units | (mM) and (gDW/L) |
| Execution date | not specified |
Experimental Details
| Temperature (°C) | 30.0 |
| pH | 5.0 |
| Carbon source | glucose |
| Culture mode | batch |
| Process condition | aerobic |
| Dilution rate (h⁻¹) | — |
| Working volume (L) | 2.0 |
| Biomass concentration (g/L) | correlation of OD with biomass: 0.486 gDW/L OD |
| Medium composition | minimal defined medium with 5 g/L glucose |
| General protocol information |
Sampling method:
1 ml samples and centrifuged for 4 min at 4000, r.p.m at 4 ºC Quenching procedure: — Extraction technique: not used Sample analyzing method: HPLC-UV/RI |
| Methods description - Notes | Biomass concentrations were monitored by measuring optical density (OD) at 600nm with a spectrophotometer (model Novaspec II, Pharmacia Biotech, USA). The correlation of OD with biomass dry weight (0.486 gDW/l OD) had previously been determined from a batch culture grown on ... ----------References------------
|
| Data file |
KIMODATAID61_v0.xlsx
|
| Alternative format(s) |
no file uploaded |
| Export metadata |
RDF:
metadataDataEntryID61.rdf
XML: metadataDataEntryID61.xml Plain text: metadataDataEntryID61.txt |
Related Data: AccessID 62 | AccessID 69 | AccessID 70 | AccessID 93 | AccessID 97 | AccessID 98 | AccessID 99 | AccessID 100 | AccessID 111 | AccessID 115 | AccessID 117 | AccessID 120 | AccessID 121 | AccessID 122 | AccessID 123 | AccessID 124 | AccessID 128
Entered by:
Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2013-06-11 18:31:52 UTC
Updated: 2020-04-24 16:10:32 UTC
Version: 0
Status: (reviewed) 2013-12-06 17:17:38 UTC
Views: 324
Downloads: 80
Associated Models
Here we can find relevant models associated with Data EntryID 61:
| Model EntryID |
Model name | Category | Model Type | Data used for | Access |
|---|
Associate models to data
- Several models can be associated.



New Model