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General Information
Manuscript title Modeling and simulation of the redox regulation of the metabolism in Escherichia coli at different oxygen concentrations.
PubMed ID 28725263
Journal Biotechnology for Biofuels
Year 2017
Authors Yu Matsuoka and Hiroyuki Kurata
Affiliations Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680 -4 Kawazu, Iizuka, Fukuoka 820 -8502, Japan
Keywords Kinetic modeling, Fermentation, Dissolved oxygen limitation, Redox regulation, ArcA, Fnr, Respiratory chain, NADH/NAD+ ratio, Escherichia coli
Full text article
Matsuoka_2017.pdf
Project name not specified
Data used for Model building and Model validation

Model Information

Model name E. coli redox regulation model
Organism Escherichia coli
Associated Data EntryID Escherichia coli (Data EntryID:101)
Escherichia coli (Data EntryID:96)
Model type ordinary differential equations
Category Metabolism
Number of reactions 90
Number of species 36
Number of regulators not specified
Number of parameters 231
Number of compartments 1
Dilution rate (h-1)
Model file(s) and history
LATEST KIMOMODELID40.xml (2018-07-20 16:25:00 UTC by Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
)
version comment: The dissolved oxygen is set as 1%.
Preview Simulate
Notes
Kinetic model source: http://www.cadlive.jp/cadlive_main/Softwares/KineticModel/Ecolimetabolism.html.
Software MATLAB (MathWorks) was used for all simulations.
BioModels or JWS Online ID
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Related Model(s): AccessID 13 | AccessID 16 | AccessID 25 | AccessID 36 | AccessID 38 | AccessID 42 | AccessID 43 | AccessID 44 | AccessID 45


Submission and curation

Entered by: Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data

Created: 2018-07-19 15:05:36 UTC

Updated: 2018-07-20 16:25:00 UTC

Version: 1

Status: (reviewed) 2018-07-19 15:07:10 UTC

Views: 3

Downloads: 3



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