Detail View - Model AccessID 41
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General Information
| Manuscript title | Improved kinetic model of Escherichia coli central carbon metabolism in batch and continuous cultures |
| PubMed ID | 29054464 |
| Journal | Journal of Bioscience and Bioengineering |
| Year | 2018 |
| Authors | Hiroyuki Kurata and Yurie Sugimoto |
| Affiliations | Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680 -4 Kawazu, Iizuka, Fukuoka 820 -8502, Japan |
| Keywords | Kinetic model, Synthetic biology, Central carbon metabolism, Dynamic simulation, Escherichia coli |
| Full text article |
Kurata_2018.pdf
|
| Project name | not specified |
| Data used for | Model building and Model validation |
Model Information
| Model name | Continuous kinetic model of Escherichia coli |
| Organism | Escherichia coli |
| Associated Data EntryID |
Escherichia coli (Data EntryID:35) Escherichia coli (Data EntryID:104) Escherichia coli (Data EntryID:105) |
| Model type | ordinary differential equations |
| Category | Metabolism |
| Number of reactions | 44 |
| Number of species | 27 |
| Number of regulators | not specified |
| Number of parameters | 351 |
| Number of compartments | 1 |
| Dilution rate (h-1) | 0.2, 0.4, 0.5 and 0.7 |
| Model file(s) and history |
LATEST KIMOMODELID41.zip
(2018-07-24 15:46:04 UTC
by Administrator KiMoSysFirst name: AdministratorAffiliation: INESC-ID/IST Homepage: http://kdbio.inesc-id.pt/kimosys Interests: mathematical modeling, accessible data, use of data )
continuous model
|
| Notes |
Kinetic model source: http://www.cadlive.jp/cadlive_main/Softwares/KineticModel/Ecolimetabolism.html.
|
| Software | MATLAB (MathWorks) |
| BioModels or JWS Online ID | — |
| Export metadata |
RDF:
metadataModelEntryID41.rdf
XML: metadataModelEntryID41.xml Plain text: metadataModelEntryID41.txt |
Related Model(s): AccessID 13 | AccessID 16 | AccessID 25 | AccessID 36 | AccessID 38 | AccessID 40 | AccessID 42 | AccessID 43 | AccessID 44 | AccessID 45
Submission and curation
Entered by:
Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Associated by: kimosys (at) kdbio.inesc-id.pt
Created: 2018-07-20 16:54:23 UTC
Updated: 2018-07-24 16:12:08 UTC
Version: 5
Status: (reviewed) 2018-07-20 16:55:55 UTC
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Downloads: 151