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General Information
| Manuscript title | Integrating Kinetic Model of E. coli with Genome Scale Metabolic Fluxes Overcomes Its Open System Problem and Reveals Bistability in Central Metabolism. |
| PubMed ID | 26469081 |
| Journal | Plos One |
| Year | 2015 |
| Authors | Ahmad A. Mannan, Yoshihiro Toya, Kazuyuki Shimizu, Johnjoe McFadden, Andrzej M. Kierzek , Andrea Rocco |
| Affiliations | Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, GU2 7XH, United Kingdom |
| Keywords | E. coli, Bistability, Central Metabolism |
| Full text article |
Mannan_2015.PDF
|
| Project name | not specified |
| Data used for | Model building |
Model Information
| Model name | kinetic model of the central carbon metabolism of E. coli |
| Organism | Escherichia coli |
| Associated Data EntryID |
Escherichia coli (Data EntryID:35) Escherichia coli (Data EntryID:41) Escherichia coli (Data EntryID:44) |
| Model type | ordinary differential equations |
| Category | Metabolism |
| Number of reactions | 37 |
| Number of species | 30 |
| Number of regulators | 37 |
| Number of parameters | 214 |
| Number of compartments | not specified |
| Dilution rate (h-1) | 0.2 |
| Model file(s) and history |
LATEST KIMOMODELID42.ZIP
(2018-07-22 12:01:48 UTC
by Administrator KiMoSysFirst name: AdministratorAffiliation: INESC-ID/IST Homepage: http://kdbio.inesc-id.pt/kimosys Interests: mathematical modeling, accessible data, use of data ) |
| Notes |
For the analysis and evaluation of the kinetic model, the solver ode15s was used.
|
| Software | MATLAB® R2007b (version 7.5.0) |
| BioModels or JWS Online ID | — |
| Export metadata |
RDF:
metadataModelEntryID42.rdf
XML: metadataModelEntryID42.xml Plain text: metadataModelEntryID42.txt |
Related Model(s): AccessID 13 | AccessID 16 | AccessID 25 | AccessID 36 | AccessID 38 | AccessID 40 | AccessID 43 | AccessID 44 | AccessID 45
Submission and curation
Entered by:
Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Associated by: kimosys (at) kdbio.inesc-id.pt
Created: 2018-07-22 12:01:48 UTC
Updated: 2018-07-22 12:01:48 UTC
Version: 0
Status: (reviewed) 2018-07-22 12:59:11 UTC
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