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General Information info

Manuscript title Integrating Kinetic Model of E. coli with Genome Scale Metabolic Fluxes Overcomes Its Open System Problem and Reveals Bistability in Central Metabolism.
PubMed ID 26469081
Journal Plos One
Year 2015
Authors Ahmad A. Mannan, Yoshihiro Toya, Kazuyuki Shimizu, Johnjoe McFadden, Andrzej M. Kierzek , Andrea Rocco
Affiliations Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, GU2 7XH, United Kingdom
Keywords E. coli, Bistability, Central Metabolism
Full text article
Downloadarticle Mannan_2015.PDF
Project name not specified
Data used for Model building

Model Information info

Model name kinetic model of the central carbon metabolism of E. coli
Organism Escherichia coli
Associated Data EntryID Escherichia coli (Data EntryID:35)
Escherichia coli (Data EntryID:41)
Escherichia coli (Data EntryID:44)
Model type ordinary differential equations
Category Metabolism
Number of reactions 37
Number of species 30
Number of regulators 37
Number of parameters 214
Number of compartments not specified
Dilution rate (h-1) 0.2
Model file(s) and history
Downloadmodel LATEST KIMOMODELID42.ZIP (2018-07-22 12:01:48 UTC by Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
)

Notes
For the analysis and evaluation of the kinetic model, the solver ode15s was used.
Software MATLAB® R2007b (version 7.5.0)
BioModels or JWS Online ID
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Associated_model


Related Model(s): AccessID 13 | AccessID 16 | AccessID 25 | AccessID 36 | AccessID 38 | AccessID 40 | AccessID 43 | AccessID 44 | AccessID 45


Submission and curation info

Entered by Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data

Associated by kimosys (at) kdbio.inesc-id.pt

Created 2018-07-22 12:01:48 UTC

Updated 2018-07-22 12:01:48 UTC

Version 0

Status (reviewed) 2018-07-22 12:59:11 UTC



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