Detail View - Data AccessID 37
General Information
Manuscript title | Is the glycolytic flux in Lactococcus lactis primarily controlled by the redox charge? Kinetics of NAD(+) and NADH pools determined in vivo by 13C NMR. |
PubMed ID | 12011086 |
Journal | The Journal of Biological Chemistry |
Year | 2002 |
Authors | Ana Rute Neves, Rita Ventura, Nahla Mansour, Claire Shearman, Michael J. Gasson, Christopher Maycock, Ana Ramos and Helena Santos |
Affiliations | Instituto de Teconcologia Química e Biológica, Universidade Nova de Lisboa and Instituto de Biologia Experimental e Tecnológico, Oeiras, Portugal |
Keywords | Lactococcus lactis, metabolism of glucose, NMR, in vivo |
Full text article | Neves_2002.pdf |
Project name | PneumoSyS |
Experiment Description
Organism | Lactococcus lactis |
Strain | MG1363 |
Data type | time-series data of metabolites |
Data units | not specified |
Execution date | not specified |
Experimental Details
Temperature (°C) | 30.0 |
pH | 6.5 |
Carbon source | glucose |
Culture mode | batch |
Process condition | anaerobic |
Dilution rate (h⁻¹) | not specified |
Working volume (L) | 0.050 |
Biomass concentration (g/L) | not specified |
Medium composition | Chemical-defined medium |
General protocol information |
Sampling method:
Cells were harvested in logarithmic growth phase (A 600 = 2.2) Quenching procedure: Centrifuges, washed, and suspended to a protein concentration of 16,5 mg/ml in 50mM Kpi or Mes/KOA buffer, pH 6,5, for 13C or 31P NMR respectively. Extraction technique: boiling ethanol Sample analyzing method: NMR |
Methods description - Notes | NMR Experiments - cells were harvested in mid-logarithmic growth phase (A600 = 2.2), centrifuged, washed twice, and suspended to a protein concentration of 16.5 mg/ml in 50 mM KPi or Mes/KOH buffer, pH 6.5, for 13C or 31P NMR experiments, respectively.
---------References---------
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Data file |
KIMODATAID37_v1.xlsx
|
Alternative format(s) |
KIMODATAID37_80mM_timeseries.csv
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RDF:
metadataDataEntryID37.rdf
XML: metadataDataEntryID37.xml Plain text: metadataDataEntryID37.txt |
Related Data: AccessID 53
Entered by:
Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2013-04-24 13:08:01 UTC
Updated: 2020-04-24 16:10:29 UTC
Version: 1
Status: (reviewed) 2014-05-01 22:49:12 UTC
Views: 393
Downloads: 85
Associated Models
Here we can find relevant models associated with Data EntryID 37:
Model EntryID |
Model name | Category | Model Type | Data used for | Access |
---|---|---|---|---|---|
23 | glycolysis Lactococcus lactis | Metabolism | ordinary differential equations | Model building and Model validation | |
24 | DEB L. lactis model | Metabolism | ordinary differential equations | Model building | |
35 | glycolysis Lactococcus lactis for mannitol and 2,3-butanediol production | Metabolism | ordinary differential equations | Model building and Model validation |
Associate models to data
- Several models can be associated.