Modeling and simulation of the redox regulation of the metabolism in Escherichia coli at different oxygen concentrations.
http://www.ncbi.nlm.nih.gov/pubmed/28725263
Biotechnology for Biofuels
2017
Yu Matsuoka and Hiroyuki Kurata
Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680 -4 Kawazu, Iizuka, Fukuoka 820 -8502, Japan
Kinetic modeling, Fermentation, Dissolved oxygen limitation, Redox regulation, ArcA, Fnr, Respiratory chain, NADH/NAD+ ratio, Escherichia coli
https://kimosys.org/rails/active_storage/blobs/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbHNFIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--acf8e1eb5005234bb2853390529e8f102165d6ce/Matsuoka_2017.pdf
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Model building and Model validation
E. coli redox regulation model
Escherichia coli
ordinary differential equations
Metabolism
90
36
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1
— h⁻¹
https://kimosys.org/repository/96/associated_models/40/sbmls/55/download;
Kinetic model source: http://www.cadlive.jp/cadlive_main/Softwares/KineticModel/Ecolimetabolism.html.
MATLAB (MathWorks) was used for all simulations.
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Administrator KiMoSys
2018-07-19 15:05:36 UTC
2018-07-20 16:25:00 UTC
1
(reviewed) 2018-07-19 15:07:10 UTC
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