ModelEntryID 40 General information Manuscript title: Modeling and simulation of the redox regulation of the metabolism in Escherichia coli at different oxygen concentrations. PubMed ID: http://www.ncbi.nlm.nih.gov/pubmed/28725263 Journal: Biotechnology for Biofuels Year: 2017 Authors: Yu Matsuoka and Hiroyuki Kurata Affiliations: Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680 -4 Kawazu, Iizuka, Fukuoka 820 -8502, Japan Keywords: Kinetic modeling, Fermentation, Dissolved oxygen limitation, Redox regulation, ArcA, Fnr, Respiratory chain, NADH/NAD+ ratio, Escherichia coli Full text article: https://kimosys.org/rails/active_storage/blobs/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbHNFIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--acf8e1eb5005234bb2853390529e8f102165d6ce/Matsuoka_2017.pdf Project name: not specified Data used for: Model building and Model validation Model information Model name: E. coli redox regulation model Organism: Escherichia coli Model type: ordinary differential equations Category: Metabolism Number of reactions: 90 Number of species: 36 Number of regulators: not specified Number of parameters: 231 Number of compartments: 1 Dilution rate (h⁻¹): — Model file(s) and history: https://kimosys.org/repository/96/associated_models/40/sbmls/55/download; Notes: Kinetic model source: http://www.cadlive.jp/cadlive_main/Softwares/KineticModel/Ecolimetabolism.html. Software: MATLAB (MathWorks) was used for all simulations. Biomodels or JWS Online ID: not specified Submission and curation Entered by: Administrator KiMoSys Created: 2018-07-19 15:05:36 UTC Updated: 2018-07-20 16:25:00 UTC Version: 1 Status: (reviewed) 2018-07-19 15:07:10 UTC Views: 241 Downloads: 130