Detail View - Data AccessID 71
General Information
Manuscript title | Generating short-term kinetic responses of primary metabolism of Penicillium chrysogenum through glucose perturbation in the bioscope mini reactor. |
PubMed ID | 16807032 |
Journal | Metabolic Engineering |
Year | 2006 |
Authors | U. Nasution, W.M. Van Gulik, A. Proell, W.A. van Winden, J.J. Heijnen |
Affiliations | Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, Netherlands |
Keywords | glucose pulse, in vivo kinetics, metabolome, Penicillium chrysogenum |
Full text article | Nasution_2006.pdf |
Project name | not specified |
Experiment Description
Organism | Penicillium chrysogenum |
Strain | DS12975 |
Data type | time-series data of metabolites |
Data units | (µmol/gDW) |
Execution date | not specified |
Experimental Details
Temperature (°C) | 25.0 |
pH | 6.5 |
Carbon source | glucose |
Culture mode | chemostat |
Process condition | aerobic |
Dilution rate (h⁻¹) | 0.05 |
Working volume (L) | 4.0 |
Biomass concentration (g/L) | 6.21 ± 0.16 |
Medium composition | 16.5 g/L glucose·H2O, 1 g/L KH2PO4, 5 g/L (NH4)2SO4, 0.5 g/L MgSO4·7H2O, and 10 ml/L of trace element solution. The trace element solution contained 15 g/L Na2-EDTA·2H2O, 0.5 g/L CuSO4·5H2O, 2 g/L ZnSO4·7H2O, 2 g/L MnSO4·H2O, 4 g/L FeSO4·7H2O and 0.5 g/L CaCl2·2H2O. For penicillin-G production the side chain precursor phenylacetic acid (PAA) was added at a concentration of 0.94 g/L. |
General protocol information |
Sampling method:
rapid sampling of broth for measurement of intracellular metabolites was carried out at 5, 10, 15, 20, 25, 35, 50, 70 and 90 s after injection of the glucose solution. Quenching procedure: 60 w/w % analytical grade methanol (ARCOS, Geel, Belgium) and water purified in a milli-QUFplus system (Millipore, Bedford, MA), buffered with 10 mM HEPES (Merck, Darmstadt, Germany) and adjusted to pH 7.5 with 3M KOA (Baker, Deventer, The Netherlands). Extraction technique: hot ethanol Sample analyzing method: HPLC-UV/RI, LC-ESI-MS |
Methods description - Notes | Chemostat pulse experiments - for the pulse response experiment carried out in the chemostat 16 ml of a 125 g/L glucose solution was injected into the reactor within 1 s. This increased the residual glucose concentration to approximately 0.5 g/L. Subsequently, rapid sampling ... -----------------References--------------
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Data file |
KIMODATAID71_v0.xlsx
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KIMODATAID71_metabolites_timeseries.csv
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Administrator KiMoSysFirst name: Administrator
Affiliation: INESC-ID/IST
Homepage: http://kdbio.inesc-id.pt/kimosys
Interests: mathematical modeling, accessible data, use of data
Created: 2013-06-21 17:03:42 UTC
Updated: 2020-04-24 16:10:34 UTC
Version: 0
Status: (reviewed) 2013-12-06 17:17:38 UTC
Views: 231
Downloads: 82
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